Recent submissions

Comment · 7 months ago
It's simple, just tell it not to hallucinate.
Comment · 10 months ago
Okay, but why?
Comment · 10 months ago
I'm working on adding features to the snakemake aws batch executor plugin. The existing plugin supports execution on AWS Batch by dynamically creating job definitions based on rule resource configuration, but was missing support for features like using different containers for different rules, consumable resources, secrets, etc. Two approaches:

1) https://github.com/radusuciu/snakemake-executor-plugin-aws-b... (my fork). Just add the features to the batch job building code 2) https://github.com/radusuciu/snakemake-executor-plugin-aws-b.... This is more experimental and not yet fully working. I wanted to try a few things. a) can we rely on existing job definitions (managed through IaC instead). b) can we implement a fire-and-forget model where the main snakemake process runs on Batch as well? c) Can we slim down the snakemake container by stripping off unnecessary features.

Comment · 11 months ago
Polars has a much more consistent API, give it a shot.

Regarding your plotting question: use seaborn when you can, but you’ll still need to know matplotlib.

Comment · 1 year ago
> But are you really going to repair it?

Yes

Comment · 1 year ago
Polars and duckdb interoperate nicely and can enable this flexibility
Comment · 2 years ago
I like using EFK (ElasticSearch-Fluent-Kibana) for this
Comment · 2 years ago
I guess then you've got to abstract one level further and formulate your advice as an allegory.

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