nkrumm

Joined 13 years ago

Karma
830
Submissions
121
Member since
Aug 29
Current: Assoc. Informatics Director, UW Department of Lab Medicine and Pathology Past: - Co-founder @OneCodex: http://onecodex.com - PhD, UW Genome Sciences - MD, University of Washington
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Recent submissions

Comment · 8 months ago
I've been in demo rooms that priced in about $100-300k (~2015 dollars), and those sound remarkably close. Not all sound/bands can be reproduced, and it really depends on the recording. Could you do it for less, also? Probably. But it was pretty fun to hear the highest end.
Comment · 2 years ago
UW Laboratory Medicine | ONSITE (Seattle, WA) or REMOTE (US-based only) | Full-Time |

Our department maintains all clinical testing and laboratory operations at the UW Medical Center, from sample collection to analysis and final reporting. We employ over 1200 people and handle 30 million tests each year. In parallel, we research, develop and operationalize novel diagnostics in genomics, mass spectrometry, flow cytometry and automated imaging.

Currently recruiting for:

* Bioinformatics developer * within our NGS analytics team and laboratory. We're looking for someone to develop and operationalize our NGS data processing pipelines, build out our operational tools/databases/systems, as well as investigate new opportunities in a translational in long-read sequencing and cell-free DNA sequencing. Experience with bioinformatics tools, annotation databases, common bioinformatics file formats highly valued. You will be working in a team of 5+ bioinformatics developers, and interacting closely with a full-stack engineering team, laboratory staff and directors.

If this sounds interesting please reach out at nkrumm@gmail with a resume. I will do my best to get back to you.

Comment · 2 years ago
Comment · 3 years ago
I had the urge to try this out a while back, here's what I came up with: https://gist.github.com/nkrumm/2b154ea2041511233079222373c83...

The decorator invokes AI completion only the first time the function is run.

edit: I lost interest before I was able to get arguments to work ¯\_(ツ)_/¯

Comment · 3 years ago
UW Laboratory Medicine | ONSITE (Seattle, WA) or REMOTE (US-based only, sorry) | Full-Time

Our department maintains all clinical testing and laboratory operations at the UW Medical Center, from sample collection to analysis and final reporting. We employ over 900 people and handle 30 million tests each year. In parallel, we research, develop and operationalize novel diagnostics in genomics, mass spectrometry, flow cytometry and automated imaging.

Currently recruiting for:

* TWO Full Stack Developers * to support our clinical laboratories. Build tools to improve our operation efficiency, automation and capabilities for our clinical labs. In particular, we are looking to built out the tooling and increase efficiency in our main clinical labs. You'll be working to improve physical workflows (samples in lab) via faster applications, more relevant and more accessible data sources, and (future) integration of novel technologies such as RFID.

These roles are about 50% full-stack web development (Flask and React preferred technology), 20% Infra/cloud engineering (AWS), and 30% team immersion (strong verbal + design skills needed).

Work environment: Flexible work/remote schedule, excellent UW benefits, cross-sectional work environment where you will be working with technologists, trainees, physicians and laboratory directors. The UW maintains a "Patients are First" model of operation-- your contribution at UW Laboratory Medicine will absolutely impact the health and lives of those patients.

If this sounds interesting please reach out at [email protected] with a resume. Our recruitment team will do my best to get back to you.

Thanks, Nik.

Comment · 3 years ago
Are there any projects that are targeting enterprise/business use cases? I would love to have:

  - a ChatGPT web ui (like chatbot-ui), 
  - but server side and (self-)hosted 
  - and with our own SSO auth. 
  - Bonus points for including Azure OpenAI endpoint connectivity + auditing/logging by user.
edit formatting
Comment · 3 years ago
We did something like this, by using postgresql's `set_config()` before every transaction. The trigger functions can read that value using `current_setting()`. It works for us, but for a relatively low-traffic internal application.
Comment · 4 years ago
UW Laboratory Medicine | ONSITE (Seattle, WA) or REMOTE (US-based only, sorry) | Full-Time Our department maintains all clinical testing and laboratory operations at the UW Medical Center, from sample collection to analysis and final reporting. We employ over 900 people and handle 30 million tests each year. In parallel, we research, develop and operationalize novel diagnostics in genomics, mass spectrometry, flow cytometry and automated imaging.

Currently recruiting for:

* Bioinformatics developer * within our NGS laboratory. We're looking for someone to develop and operationalize our germline NGS data processing pipelines, as well as investigate new opportunities in a translational research context. Experience with bioinformatics tools, annotation databases, common bioinformatics file formats highly valued!

* Senior Full Stack Developer(s) * to support our clinical laboratories. Build tools to improve our operation efficiency, automation and capabilities for our clinical labs. This role is about 50% full-stack web development (Flask and React preferred technology), 20% Infra/cloud engineering (AWS), and 30% team immersion (strong verbal + design skills needed).

* Data Engineer and Integration Engine Developer * to support our HL7 and clinical data interfacing systems. We use the Iguana interface engine to route data from laboratory instruments to connected systems. Must have a love for data munging and making connections between systems highly reliable. Experience with Epic, HL7/FHIR or other healthcare data exchange formats desired but not required.

Work environment: Flexible work/remote schedule (currently fully remote for COVID), excellent UW benefits, cross-sectional work environment where you will be working with technologists, trainees, physicians and laboratory directors. The UW maintains a "Patients are First" model of operation-- your contribution at UW Laboratory Medicine will absolutely impact the health and lives of those patients.

If this sounds interesting please reach out at nkrumm@gmail with a resume. I will do my best to get back to you.

Thanks, Nik.

Comment · 4 years ago
UW Laboratory Medicine | ONSITE (Seattle, WA) or REMOTE (US-based only, sorry) | Full-Time

Our department maintains all clinical testing and laboratory operations at the UW Medical Center, from sample collection to analysis and final reporting. We employ over 900 people and handle 30 million tests each year. In parallel, we research, develop and operationalize novel diagnostics in genomics, mass spectrometry, flow cytometry and automated imaging.

Currently recruiting for:

* Bioinformatics developer * within our NGS laboratory. We're looking for someone to develop and operationalize our germline NGS data processing pipelines, as well as investigate new opportunities in a translational research context. Experience with bioinformatics tools, annotation databases, common bioinformatics file formats highly valued!

* Senior Full Stack Developer(s) * to support our clinical laboratories. Build tools to improve our operation efficiency, automation and capabilities for our clinical labs. This role is about 50% full-stack web development (Flask and React preferred technology), 20% Infra/cloud engineering (AWS), and 30% team immersion (strong verbal + design skills needed).

* Data Engineer and Integration Engine Developer * to support our HL7 and clinical data interfacing systems. We use the Iguana interface engine to route data from laboratory instruments to connected systems. Must have a love for data munging and making connections between systems highly reliable. Experience with Epic, HL7/FHIR or other healthcare data exchange formats desired but not required.

Work environment: Flexible work/remote schedule (currently fully remote for COVID), excellent UW benefits, cross-sectional work environment where you will be working with technologists, trainees, physicians and laboratory directors. The UW maintains a "Patients are First" model of operation-- your contribution at UW Laboratory Medicine will absolutely impact the health and lives of those patients.

If this sounds interesting please reach out at nkrumm@gmail with a resume. I will do my best to get back to you.

Thanks, Nik.

Comment · 4 years ago
UW Laboratory Medicine | ONSITE/REMOTE (Seattle, WA) | Full-Time

Our department maintains all clinical testing and laboratory operations at the UW Medical Center, from sample collection to analysis and final reporting. We employ over 900 people and handle 30 million tests each year. In parallel, we research, develop and operationalize novel diagnostics in genomics, mass spectrometry, flow cytometry and automated imaging.

Currently recruiting for:

* Bioinformatics developer * within our NGS laboratory. We're looking for someone to develop and operationalize our germline NGS data processing pipelines, as well as investigate new opportunities in a translational research context. Experience with bioinformatics tools, annotation databases, common bioinformatics file formats highly valued!

* Senior Full Stack Developer * to support our clinical laboratories. Build tools to improve our operation efficiency, automation and capabilities for our clinical labs. This role is about 50% full-stack web development (Flask and React preferred technology), 20% Infra/cloud engineering (AWS), and 30% team immersion (strong verbal + design skills needed).

* Data Engineer and Integration Engine Developer * to support our HL7 and clinical data interfacing systems. We use the Iguana interface engine to route data from laboratory instruments to connected systems. Must have a love for data munging and making connections between systems highly reliable. Experience with Epic, HL7/FHIR or other healthcare data exchange formats desired but not required.

Work environment: Flexible work/remote schedule (currently fully remote for COVID), excellent UW benefits, cross-sectional work environment where you will be working with technologists, trainees, physicians and laboratory directors. The UW maintains a "Patients are First" model of operation-- your contribution at UW Laboratory Medicine will absolutely impact the health and lives of those patients.

If this sounds interesting please reach out at nkrumm@gmail with a resume. I will do my best to get back to you.

Thanks, Nik.

Comment · 5 years ago
Here is the actual draft of the recommendation as well as supporting evidence: https://www.uspreventiveservicestaskforce.org/uspstf/recomme...

Edit: Here's the document that actually outlines "what changed" from 2016 to the current draft: file:///Users/nkrumm/Downloads/aspirin-use-cvd-prevention-draft-modeling-report.pdf

Comment · 5 years ago
side project idea: create a bot that takes a screenshot of all new Show HNs, and post a comment to the thread with the screenshot
Comment · 5 years ago
UW Laboratory Medicine | ONSITE/REMOTE (Seattle, WA) | Full-Time Our department maintains all clinical testing and laboratory operations at the UW Medical Center, from sample collection to analysis and final reporting. We employ over 900 people and handle 30 million tests each year. In parallel, we research, develop and operationalize novel diagnostics in genomics, mass spectrometry, flow cytometry and automated imaging. Currently recruiting for:

* Senior Interface/Integration Engine Developer * to support our HL7 and clinical data interfacing systems. Experience with SunQuest, Epic, the Lua programming language, HL7/FHIR or other healthcare data exchange formats desired. (Please apply here: https://uwhires.admin.washington.edu/eng/candidates/default....)

Work environment: Flexible work/remote schedule (currently fully remote for COVID), excellent UW benefits, cross-sectional work environment where you will be working with technologists, trainees, physicians and laboratory directors. The UW maintains a "Patients are First" model of operation-- your contribution at UW Laboratory Medicine will absolutely impact the health and lives of those patients.

If this sounds interesting...

1) Please apply via the UW HIRES website (Link above)

2) reach out at nkrumm@gmail with a resume.

Thanks, Nik.

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