jryb
Joined 7 years ago
Joined 7 years ago
>Although if I did relax this position, I'd then be in need an explanation for why all of biochemistry feels like it takes place in some kind of cartoon universe. Like, maybe I've failed to put my finger on the reason, but I can't shake the feeling that the world being presented in biology class is just a little too cute to be this one.
Here's one possible explanation for this feeling. Consider the alternative world: any time you write a paper about a protein, you have to measure its interactions with every other biomolecule that's present in the cell of interest. Then, you need to model all of those interactions simultaneously. You probably couldn't do that in 10 lifetimes. It's just not practical to do this, so you never read about it. Papers and textbooks necessarily present things in an overly focused way.
So any paper you read has some...selection bias? If you're trying to find a zinc finger that binds some particular DNA sequence, and you find one and it has nanomolar affinity, you don't need to worry about what happens when that ZF binds actin or RNA polymerase or some phospholipid. We already know from the fact that it has nanomolar affinity for its target DNA that it isn't being sequestered by anything else in any measurable way. But its affinity for actin or whatever isn't zero - there IS a number, and they DO interact - it's just that it's incredibly weak and transient, so you're not going to notice it incidentally. Biology may seem cute because the ugly version would cost 20,000x as much to produce.
There are even educational demonstrations where people shake bags of 3D printed proteins with magnets (including competing proteins) and you end up with the expected structure.
So what this fraud does is convince you to give these antibodies a chance when you otherwise wouldn’t have. You should validate them yourself and show they only bind your target before doing an experiment, but now you’re just wasting time and money evaluating something that’s guaranteed to fail.
Antibodies are notoriously unreliable, so you might have to give two or three vendors a try before you get one that works. Now I’m starting to wonder how much of that reputation is due to fraud and not just nature.
It’s like reminding someone they shouldn’t say “bicycle” but should instead say “fahrrad”.