I had no idea they were ending this program. I had a MEXT scholarship for a PhD in aerospace engineering. In my case I tried the recommendation via school first and didn't get it even though I did have a letter from a Professor. By coincidence a year later I had an internship in Japan with another Professor and with his support I got into the program via the embassy route.
Your experience mostly tracks with mine, but in my case there was a lot of interaction between Japanese and foreign students, and international journal and conference submissions were preferred. Many courses were offered in English and those that weren't, I could do homework and tests in English. Thesis had to be in English, even for Japanese students. It was a goal of the program to also help Japanese students get comfortable with international collaboration and working in English.
In my case I stayed in Japan for a decade and it was overall a very good experience.
One note about working as a student in Japan. You can work up to 28 hours a week without limitations as you noted. You can even work remotely for a foreign company, which is unique because if you have a work visa and freelance in Japan either as your main job, or a side job, your main client is supposed to be Japanese. This is a slightly grey area, your taxes are to be paid in Japan, and the company will be "operating in Japan" so be very careful about doing this by the books.
Your experience mostly tracks with mine, but in my case there was a lot of interaction between Japanese and foreign students, and international journal and conference submissions were preferred. Many courses were offered in English and those that weren't, I could do homework and tests in English. Thesis had to be in English, even for Japanese students. It was a goal of the program to also help Japanese students get comfortable with international collaboration and working in English.
In my case I stayed in Japan for a decade and it was overall a very good experience.
One note about working as a student in Japan. You can work up to 28 hours a week without limitations as you noted. You can even work remotely for a foreign company, which is unique because if you have a work visa and freelance in Japan either as your main job, or a side job, your main client is supposed to be Japanese. This is a slightly grey area, your taxes are to be paid in Japan, and the company will be "operating in Japan" so be very careful about doing this by the books.