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Comment by eric-burel
The thing is running it onto your machine is kinda the point. These agents are meant to operate at the same level - and perhaps replace - your mail agent and file navigator. So if we sandbox too much we make it useless.
The compromise being having separate folders for AI, a bit like having a Dropbox folder on your machine with some subfolders being personal, shared, readonly etc.
Running terminal commands is usually just a bad idea though in this case, you'd want to disable that and instead fine tune a very well configured MCP server that runs the commands with a minimal blast radius.