Comment by lateforwork

Most application's file formats are structured as a tree, not as flat tables. If your application's data is flat tables or name-value pairs then SQLite is an obvious choice. But if it is tree structured then it is less obvious. You can still save your tree in JSON format as a blob in a SQLite table but in this case the benefits are fewer. But if in addition to the JSON you have images or other binary data then once again SQLite offers benefits, because each of those binary files can be additional rows in the SQLite table. This is far easier to handle than storing them in ZIP format.