Comment

Comment by jefftk

The FASTA format looks like:

    > title
    bases with optional newlines
    > title
    bases with optional newlines
    ...
The author is talking about removing the non-semantic optional newlines (hard wrapping), not all the newlines in the file.

It makes a lot of sense that this would work: bacteria have many subsequences in common, but if you insert non-semantic newlines at effectively random offsets then compression tools will not be able to use the repetition effectively.

parent jefftk 1 year ago

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