The LLM uses MCP to learn what tools the server makes available; the LLM decides when to use them. (The process is a little more complicated than that, but if you're just trying to call tools without an LLM, those parts aren't really important.) If you ask the LLM, "Find all files with an asterisk," it might deduce that it can use the search_files tool provided by that MCP to gain the needed context, invoke that tool, then process the results it returns. As an engineer, you can just call search_files if you know that's what you want.
Have a look at the Filesystem example MCP server - https://github.com/modelcontextprotocol/servers/blob/main/sr.... It has a collection of Tools - read_file, read_multiple_files, write_file, etc.
The LLM uses MCP to learn what tools the server makes available; the LLM decides when to use them. (The process is a little more complicated than that, but if you're just trying to call tools without an LLM, those parts aren't really important.) If you ask the LLM, "Find all files with an asterisk," it might deduce that it can use the search_files tool provided by that MCP to gain the needed context, invoke that tool, then process the results it returns. As an engineer, you can just call search_files if you know that's what you want.