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Comment by mespe
Funny thing is this has actually motivated me to move away from using rmarkdown. To the point that I went "backwards" and wrote several reports and an academic paper in Sweave after using rmarkdown for years. My primary motivation was that I needed to know the documents could be built by any R session, not just from within RStudio. I didn't want to be in a situation where my "reproducible" document relied on a specific IDE to build correctly.