Plenty of software projects put more care and focus into their software and not in their website, if you're running a vulnerable version of Wordpress or whatever CMS it'd be easy for someone to insert something malicious without being noticed whereas something that modified your code would show up in git, code reviews etc
Plenty of software projects put more care and focus into their software and not in their website, if you're running a vulnerable version of Wordpress or whatever CMS it'd be easy for someone to insert something malicious without being noticed whereas something that modified your code would show up in git, code reviews etc