In no so many words, the article is pointing out that O(n) + O(1) is not necessarily quicker than O(n) + O(n): both add to O(n) (since only the highest-order factor matters), and the constant factor is unsurprisingly better for array lists.
He's not benchmarking an O(1) operation against an O(n), or anything surprising, or even pointing out a "hidden" O(n) operation, it's simply a demonstration that O(n) + O(1) = O(n).
He's not benchmarking an O(1) operation against an O(n), or anything surprising, or even pointing out a "hidden" O(n) operation, it's simply a demonstration that O(n) + O(1) = O(n).